Kanta | FinnGen ETL to OMOP CDM

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Finngenid_info
Drug_events
- drug_events to visit_occurrence
- drug_events to drug_exposure
Hilmo
- hilmo to visit_occurrence
- hilmo to stem
Prim_out
- prim_out to visit_occurrence
- prim_out to stem
Reimb
- reimb to visit_occurrence
- reimb to stem
Canc
- canc to visit_occurrence
- canc to stem
Death_register
- death_register to visit_occurrence
- death_register to stem
Birth_mother
- birth_mother to visit_occurrence
- birth_mother to stem
Vision
Kidney
Stem
Kanta
Appendixes
Fg_codes_info
- fg_codes_info to provider

ETL repository on GitHub
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ETL vDF13.0

Kanta

Kanta lab values registry contains measurement values of lab tests covering years 2014 to 2023 within FinnGen (since 2014)[FinnGen Handbook]

Table of contents

kanta to provider
kanta to visit_occurrence
kanta to measurement