birth_mother to visit_occurrence
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%%{init: {'theme': 'base' } }%%
flowchart LR
subgraph Source
mother_finngenid
mother_age
end
subgraph CDM-OMOP-v5.4
person_id
visit_start_date
end
mother_finngenid-->person_id
mother_age-->visit_start_date
Destination Field | Source field | Logic | Comment field |
---|---|---|---|
visit_occurrence_id | Incremental integer. Unique value per mother_finngenid + 100000000000 (offset). | Generated | |
person_id | finngenid | person_id from person table where person_source_value equals mother_finngenid | Calculated |
visit_concept_id | concept_id_2 from concept_relationship table where concept_id_1 equals visit_source_concept_id and relationship_id equals “Maps to”. | Calculated NOTE: 0 when visit_source_concept_id is NULL | |
visit_start_date | mother_age | approx_delivery_date is calculated as by adding mother_age to approx_birth_date from finngenid_info table. | Calculated NOTE: At the moment MOTHER_AGE has a precision of +/-3 days. Hence, the exacta date may not be precise. |
visit_start_datetime | Calculated from visit_start_date with time 00:00:0000 | Calculated | |
visit_end_date | copied from approx_delivery_date | Copied | |
visit_end_datetime | Calculated from visit_end_date with time 00:00:0000 | Calculated | |
visit_type_concept_id | Set 32879 - ‘Registry’ for all | Calculated | |
provider_id | Set 0 for all | Info not available | |
care_site_id | Set 0 for all | Info not available | |
visit_source_value | String build as “SOURCE=BIRTH_MOTHER;INDEX=” | Calculated | |
visit_source_concept_id | omop_concept_id from fg_codes_info where source equals “BIRTH_MOTHER” | Calculated using the fg_codes_info table. | |
admitted_from_concept_id | Set 0 for all | Info not available | |
admitted_from_source_value | Set NULL for all | Info not available | |
discharged_to_concept_id | Set 0 for all | Info not available | |
discharged_to_source_value | Set NULL for all | Info not available | |
preceding_visit_occurrence_id | Set 0 for all | Info not available |