canc to stem
%%{init: {'theme': 'base' } }%%
%%{init: {'theme': 'base' } }%%
flowchart LR
subgraph Source
code1_topo
code2_morpho
code3_beh
end
fg_codes_info[[fg_codes_info]]
subgraph STEM
omop_source_concept_id
end
code1_topo-->fg_codes_info
code2_morpho-->fg_codes_info
code3_beh-->fg_codes_info
fg_codes_info-->omop_source_concept_id
| Destination Field | Source field | Logic | Comment field |
| finngenid | finngenid | Copied as it is | Copied |
| source | source | Copied as it is | Copied |
| approx_event_day | approx_event_day | Copied as it is | Copied |
| code1 | code1_topo | Copied as it is | Copied |
| code2 | code2_morpho | Copied as it is | Copied |
| code3 | code3_beh | Copied as it is | Copied |
| code4 | | Set NULL for all | Info not available |
| category | category | Copied as it is | Copied |
| index | index | Copied as it is | Copied |
| code | | code from fg_codes_info where vocabulary_id=vocabulary_id and code1=fg_code1 and code2=fg_code2 and code3=fg_code3 | Calculated |
| vocabulary_id | | vocabulary_id is “ICDO3” | Calculated |
| omop_source_concept_id | | omop_concept_id from fg_codes_info where vocabulary_id=vocabulary_id and code1=fg_code1 and code2=fg_code2 and code3=fg_code3 | Calculated |
| default_domain | | Default domain is “condition” | Calculated |