All functions

CDMdbHandler

CDM Database Handler Class

HadesExtras_createCDMdbHandlerFromList()

createCDMdbHandlerFromList

HadesExtras_readAndParseYaml()

Read and Parse YAML File with Placeholder Replacement

LogTibble

LogTibble

connectionHandlerFromList()

Create a ConnectionHandler from a configuration list

createCodeCountsTableFromResults()

Create a reactable table from results

createCodeCountsTables()

Create code counts table

createMermaidGraphFromResults()

Create a Mermaid graph visualization from results

createPlotFromResults()

Create a plotly visualization from results

createReport()

Create a dynamic HTML report for concept analysis

createStratifiedCodeCountsTable()

Create stratified code counts table

create_api()

Create a Plumber API for ROMOPAPI

.createConsoleAppenderForSandboxLogging()

Create Console Appender for Sandbox Logging

.familyTreeToAncestorTable()

Convert family tree to ancestor table

fct_setUpLogger()

Set Up Logger

getAPIInfo()

Get the API information

getCodeCounts()

Get code counts and related concept information

getCodeCounts_memoise()

Memoised version of getCodeCounts

getConceptsWithCodeCounts()

Get list of concepts with code counts

getConceptsWithCodeCounts_memoise()

Memoised version of getConceptsWithCodeCounts

getLogs()

Get logs from ParallelLogger temp file

helper_FinnGen_getDatabaseFile()

Get FinnGen Eunomia database file

helper_FinnGen_getDatabaseFileCounts()

Get FinnGen counts-only database file

helper_createSqliteDatabaseFromDatabase()

Create SQLite database from CDM database

pruneLevelsFromResults()

Prune levels from results

runApiServer()

Run the ROMOPAPI API server

sendFeedback()

Send feedback to the API server